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Differential regulation of colonic PPAR expression by dietary fatty acids
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Hontecillas, R., S.C. Jobgen, L.L. Beary, M.J. Wannemuehler, and J. Bassaganya-Riera. (2003) Differential regulation of colonic PPAR [...]
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Modulation of anti-viral activity and viral-induced lymphoid depletion by conjugated linoleic acid
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Bassaganya-Riera, J., R. Hontecillas, P.G. Halbur, K.J. Yoon, M.J. Wannemuehler, and R.M. Progranichniy (2003) Modulation of anti-viral [...]
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Nutritional regulation of bacterial-induced colitis by conjugated linoleic acid
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Bassaganya-Riera, J., R. Hontecillas, D.R. Zimmerman, D.L. Hutto, D. U. Ahn, and M.J. Wannemuehler (2002) Nutritional regulation of [...]
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Effects of repeated porcine reproductive and respiratory syndrome virus vaccinations on lymphocyte recall responses in sows
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Bassaganya-Riera, J., B.J. Thacker, S. Yu, E. Strait, M.J. Wannemuehler, and E.L. Thacker (2001) Effects of repeated porcine [...]
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Comparative responses of porcine TCRαβCD4 and TCRγδ lymphocytes to a proteinase-digested preparation of Brachyspira hyodysenteriae
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Hontecillas, R., J. Bassaganya-Riera, and M.J. Wannemuehler (2001) Comparative responses of porcine TCRabCD4 and TCRγδ lymphocytes to [...]
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Long-term influence of dietary conjugated linoleic acid supplementation on induction of T cell responses to viral or bacterial antigens
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Bassaganya-Riera, J., R. Hontecillas, D.R. Zimmerman, and M.J. Wannemuehler (2001) Long-term influence of dietary conjugated linoleic [...]
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Dietary conjugated linoleic acid ameliorates intestinal inflammation in pigs
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Bassaganya-Riera, J., R. Hontecillas, and M.J. Wannemuehler (2001) Dietary conjugated linoleic acid ameliorates intestinal inflammation [...]
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Dynamics of growth and death in antigen specific swine T-cell subset proliferation in vitro
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Harkins, K., R. Waters, J. Bassaganya-Riera, and M. Wannemuehler (2000). Dynamics of growth and death in antigen specific swine [...]
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Forward angle light scatter sensitivity for the detection of proliferating swine lymphocytes
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Harkins, K., R. Waters, J. Bassaganya-Riera, D. Cheng, and M. Wannemuehler (1999). Forward angle light scatter sensitivity for the [...]
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Dietary conjugated linoleic acid increases CD8 T lymphocytes subpopulations in weaning pigs
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Bassaganya-Riera, J, R. Hontecillas, K. Bregendahl, M. Wannenmuehler, and D.R. Zimmerman (1999) Dietary conjugated linoleic acid [...]
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Using Big Data to Inform Mental Health Policies
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Andalib, M., G. Hughes, N. Hosseinichimeh, A.B. Lakeh, V. Abedi, R. Zand, N. Ghaffarzadegan. INFORMS 2015. Philadelphia, PA. November 1-4, 2015
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ENISI Multiscale modeling of mucosal immune responses driven by high performance computing
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Vida Abedi, Raquel Hontecillas, Stefan Hoops, Nathan Liles, Adria Carbo, Pinyi Lu, Cassandra Philipson and Josep Bassaganya-Riera. IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015). Washington, DC, USA. 2015
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Modeling Immunity to Enteric Pathogens
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Bassaganya-Riera, J. (2015) Invited Speaker; Modeling Immunity to Enteric Pathogens, Modeling Immunity for Biodefense Summer School/Symposia, Rochester, NY
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Modeling Immune responses to Helicobacter pylori
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Bassaganya-Riera, J. (2015) Invited Speaker; Modeling Immune responses to Helicobacter pylori, Modeling Immunity for Biodefense, Rockville, MD
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Computational modeling of mechanisms underlying immune responses to Helicobacter pylori
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Bassaganya-Riera, J. (2015) Invited Speaker; Computational modeling of mechanisms underlying immune responses to Helicobacter pylori, AMS Esteren Sectional, Georgetown University, Washington, DC
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Computational immunology in autoimmune diseases
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Bassaganya-Riera, J. (2014) Invited Speaker; Computational immunology in autoimmune diseases, Feinstein Institute for Medical Research, Manhasset, NY
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ENISI MSM: A novel multiscale modeling platform
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Bassaganya-Riera, J. (2014) Invited Speaker; ENISI MSM: A novel multiscale modeling platform, IEEE International Conference: BIBM, Belfast, UK
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Multiscale Modeling and Computational Immunology in Infectious Diseases
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Bassaganya-Riera, J. (2014) Invited Speaker; Multiscale Modeling and Computational Immunology in Infectious Diseases, DoD, Dahlgren, VA
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Mechanisms underlying immune responses to enteric pathogens
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Bassaganya-Riera, J. (2013) Invited speaker; Mechanisms underlying immune responses to enteric pathogens, Division of Gastroenterology, VT Carilion School of Medicine, Roanoke, VA.
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From the past to the future
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Bassaganya-Riera, J. (2013) Session Chair; International Conference on Computational Biology: From the past to the future, Virginia Tech, Blacksburg, VA.
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Phase III Placebo-Controlled, Randomized Clinical Trial with Synthetic Crohn's disease Patients to Evaluate Treatment Response
- Abedi, V., P. Lu, R. Hontecillas, M. Verma, G. Vess, C. Philipson, A. Carbo, A. Leber, N.T. Juni, S. Hoops, J. Bassaganya-Riera. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology – Systems & Applications. In Press: Elsevier/MK 2015.
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Modeling exercises
- Abedi, V., S. Hoops, R. Hontecillas, A. Carbo, C. Philipson, M. Viladomiu, A. Leber, P. Lu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Multiscale Modeling: Concepts, Technologies, and Use Cases in Immunology
- Abedi, V., R. Hontecillas, A. Carbo, C. Philipson, S. Hoops, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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From Big Data Analytics and Network Inference to Systems Modeling
- Michalak, P., B.W. Sobral, V. Abedi, Y.B. Kim, X. Deng, C. Philipson, M. Viladomiu, P. Lu, K. Wendelsdorf, R. Hontecillas, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Agent-Based Modeling and High Performance Computing
- Alam, M., V. Abedi, J. Bassaganya-Riera, K. Wendelsdorf, K. Bisset, X. Deng, S. Eubank, R. Hontecillas, S. Hoops, M. Marathe. Computational Immunology: Models and Tools. Elsevier 2015.
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Ordinary Differential Equations (ODE) based Modeling
- Hoops, S., R. Hontecillas, V. Abedi, A. Leber, C. Philipson, A. Carbo, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Immunoinformatics cybernfrastructure for modeling and analytics
- Hoops, S., B.W. Sobral, P. Michalak, V. Abedi, B. Kronsteiner, R. Hontecillas, M. Viladomiu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Use of Computational Modeling in Immunological Research
- Hontecillas, R., J. Bassaganya-Riera, C. Philipson, A. Leber, M. Viladomiu, A. Carbo, K. Wendelsdorf, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Computational Modeling
- Bassaganya-Riera, J., R. Hontecillas, V. Abedi, A. Carbo, C. Philipson, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Introduction to Computational Immunology
- Bassaganya-Riera, J., R. Hontecillas. Computational Immunology: Models and Tools. Elsevier 2015.
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Modulation of CD8+ T cell Responses by Conjugated Linoleic Acid
- Bassaganya-Riera, J, R. Hontecillas. Advances in CLA Research. Champaign, IL: American Oil Chemists Society Press 2006.
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Computational Immunology: Models, tools and approaches for systems immunology
- Bassaganya-Riera, J.. Elsevier 2015.
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Literature mining and ontology mapping applied to big data
- Abedi V, M. Yeasin, R. Zand. Mining Big Data to Improve National Security. Elsevier 2015.
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Supervised Learning with Artificial Neural Network in Modeling of Cell Differentiation Process
- Lu, P, V. Abedi, Y. Mei, R. Hontecillas, C. Philipson, S. Hoops, A. Carbo, J. Bassaganya-Riera,. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology (1st ed.). Burlington, Massachusetts: Morgan Kaufmann (an imprint of Elsevier) 2015. 1-18
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The M2 Pipeline: A Novel Tool for Rapidly Analyzing Host Metabolic Profiles from RNA-seq Data
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Abstract— A novel bioinformatics and data analytics pipeline that utilizes global gene expression datasets in combination with [...]