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Modulation of immune responses to Clostridium difficile by peroxisome proliferator-activated receptor γ and miRNA-146b
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Viladomiu, M., R. Hontecillas, M. Pedragosa, P. Michalak, K. Michalak, R.L. Guerrant, J.K. Roche, C.A. Warren and J. Bassaganya-Riera [...]
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Th17 responses driven via PPAR γ blockade lead to faster recovery from enteroaggregative Escherichia
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Washington, C., J. Bassaganya-Riera, M. Viladomiu, M. Pedragosa, R.L. Guerrant, J.K. Roche and R. Hontecillas (2012) Th17 responses [...]
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Helicobacter pylori infection in pigs is dominated by a Th1 and cytotoxic immune response
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Kronsteiner, B., J. Bassaganya-Riera, C. Washington, S. Vento, M. Pedragosa, M. Viladomiu, A. Carbo and R. Hontecillas (2012) [...]
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Immunomodulatory actions of lanthionine synthetase C-like 2-based drugs
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Lu, P., R. Hontecillas, M. Viladomiu, M. Pedragosa, A. Carbo, D.R. Bevan, S.N. Lewis, and J. Bassaganya-Riera (2012) Immunomodulatory [...]
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A lipidomics analysis of influenza infection and PPAR g activation
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Monroe, J., J. Bassaganya-Riera, K. Ray, R. Helm, B. Kronsteiner, and R. Hontecillas (2012) A lipidomics analysis of influenza [...]
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Computational analysis of peroxisome proliferator-activated receptor-gamma as a nutraceutical target
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Stephanie N. Lewis, Zulma Garcia, Lera Brannan, Amir J. Guri, Pinyi Lu, Raquel Hontecillas, Josep Bassaganya-Riera, and David R. Bevan [...]
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MIEP team presented COPASI in MIB
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COmplex PAthway SImulator: A Tool for Modeling Complex Immunological Systems New discoveries in immunology have triggered the [...]
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MIEP team presented ENISI at MIB
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ENteric Immunity SImulator: A Tool for in silico Study of Mucosal Immunity ENISI is a tool for mucosal immunologists to test and [...]
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NIMML team awarded American College of Gastroenterology Presidential Poster of distinction for human clinical trial reporting the anti-inflammatory efficacy of conjugated linoleic acid in patients with Crohn’s disease
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NIMML team awarded American College of Gastroenterology Presidential Poster of distinction for human clinical trial reporting the [...]
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Immunoregulatory mechanisms of microRNAs during Clostridium difficile infection
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Viladomiu Pujol, M., R. Hontecillas, K. Michalak, C. Philipson, E. Schiff, A. Carbo, P. Michalak, and J. Bassaganya-Riera, (2014) [...]
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Nutritional Regulation of Mucosal Inflammation and Immunity
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Bassaganya-Riera, J. (2009) Invited speaker; Nutritional Regulation of Mucosal Inflammation and Immunity. CGIBD Research Seminar at University of North Carolina, Chapel Hill, NC
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Nutritional Modulation of IBD by CLA and n-3 PUFA
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Bassaganya-Riera, J. (2009) Invited speaker; Nutritional Modulation of IBD by CLA and n-3 PUFA; ESPEN Annual Meeting, Austria, Vienna.
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BioTherapeutics: A Nutraceutical Company
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Bassaganya-Riera, J. (2008) Invited speaker; BioTherapeutics: A Nutraceutical Company. MidAtlantic Business Alliance, McLean, VA.
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Nutritional Immune Modulation in Infectious Diseases
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Bassaganya-Riera, J. (2008) Invited speaker; Nutritional Immune Modulation in Infectious Diseases. University of Virginia, Charlottesville, VA.
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Nutritional modulation of inflammation-induced colorectal cancer
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Bassaganya-Riera, J. (2008) Invited speaker; Nutritional modulation of inflammation-induced colorectal cancer; Texas A&M, College Station, TX
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Symposium on Inflammation and Innate Immunity
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Bassaganya-Riera, J. (2008) Invited facilitator by the Translational Science Institute at Wake Forest University. Symposium on Inflammation and Innate Immunity, Winston-Salem, NC.
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Mechanisms of modulation of inflammation-induced colorectal cancer by CLA
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Bassaganya-Riera, J. (2007) Invited speaker at the II International CLA Congress; Mechanisms of modulation of inflammation-induced colorectal cancer by CLA; Corsica, Italy.
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Nutritional modulation of chronic inflammation
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Bassaganya-Riera, J. (2007) Invited speaker; Nutritional modulation of chronic inflammation; Michigan State University, East Lansing, MI.
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Nutritional modulation of mucosal immunity
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Bassaganya-Riera, J. (2007) Invited speaker; Nutritional modulation of mucosal immunity; University of London, London, UK.
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Nutritional modulation of inflammation and immunity
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Bassaganya-Riera, J. (2007) Invited speaker in the Nutrition Seminar; Nutritional modulation of inflammation and immunity; University of Connecticut, Storrs, CT.
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Phase III Placebo-Controlled, Randomized Clinical Trial with Synthetic Crohn's disease Patients to Evaluate Treatment Response
- Abedi, V., P. Lu, R. Hontecillas, M. Verma, G. Vess, C. Philipson, A. Carbo, A. Leber, N.T. Juni, S. Hoops, J. Bassaganya-Riera. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology – Systems & Applications. In Press: Elsevier/MK 2015.
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Modeling exercises
- Abedi, V., S. Hoops, R. Hontecillas, A. Carbo, C. Philipson, M. Viladomiu, A. Leber, P. Lu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Multiscale Modeling: Concepts, Technologies, and Use Cases in Immunology
- Abedi, V., R. Hontecillas, A. Carbo, C. Philipson, S. Hoops, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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From Big Data Analytics and Network Inference to Systems Modeling
- Michalak, P., B.W. Sobral, V. Abedi, Y.B. Kim, X. Deng, C. Philipson, M. Viladomiu, P. Lu, K. Wendelsdorf, R. Hontecillas, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Agent-Based Modeling and High Performance Computing
- Alam, M., V. Abedi, J. Bassaganya-Riera, K. Wendelsdorf, K. Bisset, X. Deng, S. Eubank, R. Hontecillas, S. Hoops, M. Marathe. Computational Immunology: Models and Tools. Elsevier 2015.
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Ordinary Differential Equations (ODE) based Modeling
- Hoops, S., R. Hontecillas, V. Abedi, A. Leber, C. Philipson, A. Carbo, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Immunoinformatics cybernfrastructure for modeling and analytics
- Hoops, S., B.W. Sobral, P. Michalak, V. Abedi, B. Kronsteiner, R. Hontecillas, M. Viladomiu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Use of Computational Modeling in Immunological Research
- Hontecillas, R., J. Bassaganya-Riera, C. Philipson, A. Leber, M. Viladomiu, A. Carbo, K. Wendelsdorf, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Computational Modeling
- Bassaganya-Riera, J., R. Hontecillas, V. Abedi, A. Carbo, C. Philipson, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Introduction to Computational Immunology
- Bassaganya-Riera, J., R. Hontecillas. Computational Immunology: Models and Tools. Elsevier 2015.
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Modulation of CD8+ T cell Responses by Conjugated Linoleic Acid
- Bassaganya-Riera, J, R. Hontecillas. Advances in CLA Research. Champaign, IL: American Oil Chemists Society Press 2006.
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Computational Immunology: Models, tools and approaches for systems immunology
- Bassaganya-Riera, J.. Elsevier 2015.
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Literature mining and ontology mapping applied to big data
- Abedi V, M. Yeasin, R. Zand. Mining Big Data to Improve National Security. Elsevier 2015.
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Supervised Learning with Artificial Neural Network in Modeling of Cell Differentiation Process
- Lu, P, V. Abedi, Y. Mei, R. Hontecillas, C. Philipson, S. Hoops, A. Carbo, J. Bassaganya-Riera,. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology (1st ed.). Burlington, Massachusetts: Morgan Kaufmann (an imprint of Elsevier) 2015. 1-18
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The M2 Pipeline: A Novel Tool for Rapidly Analyzing Host Metabolic Profiles from RNA-seq Data
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Abstract— A novel bioinformatics and data analytics pipeline that utilizes global gene expression datasets in combination with [...]